Andrea Edwards, a graduate student in Kevin Raney’s lab was selected to give both an oral and a poster presentation at the NAD+ Metabolism and Signaling Conference in Dublin, Ireland.
News
June publications
Effect of Sulforaphane and 5-Aza-2′-Deoxycytidine on Melanoma Cell Growth.
Chiang TC, Koss B, Su LJ, Washam CL, Byrum SD, Storey A, Tackett AJ.
Medicines (Basel). 2019 .
Direct quantification of the translocation activities of Saccharomyces cerevisiae Pif1 helicase.
Lu C, Le S, Chen J, Byrd AK, Rhodes D, Raney KD, Yan J.
Nucleic Acids Res. 2019
Biotransformation and Bioactivation Reactions – 2018 Literature Highlights.
Khojasteh SC, Bumpus NN, Driscoll JP, Miller GP, Mitra K, Rietjens IMCM, Zhang D.
Drug Metab Rev. 2019
Dr. Eoff receives NSF grant
Dr. Robert Eoff has received a new, four-year grant award from the NSF. The award is for ~1.2 million to study “Replication of G-quadruplex DNA by translesion polymerases”. Dr. Julie Gunderson of Hendrix College is co-Investigator on the grant.
Andrea Edwards receives fellowship
Andrea Edwards, a graduate student in Kevin Raney’s lab was selected as a Southern Regional Education Board SREB-Doctoral Scholars Program recipient for 2019-2020. Her graduate studies will be funded through a partnership arrangement between SREB, the State of Arkansas, and the University of Arkansas for Medical Services. She will also have her expenses paid to attend the annual Institute on Teaching and Mentoring. Congratulations Andrea!
Alan D. Elbein Award for Research Excellence Awarded to Dr. Magdalena Delgado
Dr. Magdalena Delgado who recently completed her Ph.D. in Dr. Tim Chamber’s lab has been awarded the Alan D. Elbein Award for Research Excellence. The award is named in honor of Dr. Alan D. Elbein, who was Chair of the Department of Biochemistry & Molecular Biology from 1991 until 2009 and is given to graduate students that have shown extraordinary research performance during their graduate career. Areas of evaluation include but are not limited to fellowships, manuscripts, and presentations of research. Congratulations Dr. Delgado!
SURF Mid-Summer Symposium
Ten undergraduate students who are spending their summer in the UAMS Biochemistry and Molecular Biology Department doing research projects presented their work at the SURF Mid-Summer Symposium.
Cancer Institute Member Spotlight
June 14, 2019
Kevin Raney, Ph.D.
Professor and Chair
Department of Biochemistry and Molecular Biology
UAMS College of Medicine
Research Interest Statement
The Raney laboratory is interested in the mechanisms and functions of nucleic acid enzymes called helicases. Helicases play central roles in all aspects of DNA and RNA metabolism; therefore they are key enzymes in maintaining genomic stability. Genetic mutations in many helicases have been correlated with numerous cancers. The Pif1 helicase is a major focus of study. Mutations in Pif1 have been linked to increased incidence of breast cancer. We are studying how such mutations alter the biochemical mechanism and ultimately biological function of the enzyme, thereby leading to cancer.
A related interest of the Raney lab is in non-canonical structures of DNA and RNA that form in guanine-rich sequences termed G-quadruplex. Over 500,000 potential G-quadruplex sequences exist in the human genome but their function is largely unknown. We have identified a novel function for G-quadruplex sequences that appears to be fundamental to cellular responses to reactive oxygen species. In response to DNA damage due to oxidative stress, G-quadruplex sequences are removed from the genome, then interact with a variety of proteins. Telomeric and mitochondrial DNA are particularly susceptible to oxidative stress and contain many sequences that readily fold into quadruplex structures. We and others have found that the excised DNA quadruplexes can modulate multiple cellular activities including cell death. We hypothesize that such mechanisms involving G-quadruplexes are important to carcinogenesis. G-quadruplex structures have emerged as a target for developing anti-cancer therapies.
Dr. Raney’s Grants
National Institute of General Medical Sciences
Functions and mechanisms of helicases and g-quadruplex nucleic acids
05/01/2017 – 04/30/2022
$360,000*
*cancer-related annual direct costs
Dr. Raney’s UAMS Collaborators
Robert Eoff, Ph.D., Biochemistry and Molecular Biology
Guilia Baldini, Ph.D., Biochemistry and Molecular Biology
Angus MacNicol, Ph.D., Neurobiology and Developmental Sciences
Alicia Byrd, Ph.D., Biochemistry and Molecular Biology
Boris Zybailov, Ph.D., Biochemistry and Molecular Biology
Stephanie Byrum, Ph.D., Biochemistry and Molecular Biology
Peter Crooks, Ph.D., D.Sc., Pharmaceutical Sciences
Dr. Raney’s External Collaborators
Craig Cameron, Ph.D., Pennsylvania State University
Maria Spies, Ph.D., University of Iowa
Nayun Kim, Ph.D., University of Texas Health Science Center
Opportunities for Collaboration
New ideas emerge from discussions with scientists outside of one’s field. We welcome discussions and will gladly pursue opportunities in areas closely or loosely related to DNA damage response mechanisms. Other areas of interest include drug discovery.
You May Not Know That …
My wife, Veronica, and I have been married for 33 years. We have three children and two grandchildren. I was raised in north Arkansas where I enjoyed canoeing, hiking and caving.
Recent Cancer-Related Publications
- Gao J, Byrd AK, Zybailov BL, Marecki JC, Guderyon MJ, Edwards AD, Chib S, West KL, Waldrip ZJ, Mackintosh SG, Gao Z, Putnam AA, Jankowsky E, Raney KD. “DEAD-box RNA helicases Dbp2, Ded1 and Mss116 bind to G-quadruplex nucleic acids and destabilize G-quadruplex RNA.” Chem Commun (Camb). 2019, Apr 11;55(31): 4467-4470. doi: 10.1039/c8cc1009h. PMID: 30855040
- Marecki JC, Aarattuthodiyil S, Byrd AK, Penthala NR, Crooks PA, Raney KD. “N-Naphthoyl-substituted indole thio-barbituric acid analogs inhibit the helicase activity of the hepatitis C virus NS3”. 2019. Bioorg Med Chem Lett. 2019 Feb 1;29(3):430-434. doi: 10.1016/j.bmcl.2018.12.026. Epub 2018 Dec 13. PMID: 30578035PMCID: PMC6377802 [Available on 2020-02-01]
- Griffin, W.C., Gao, J., Byrd, A.K., Chib, S., and Raney, K.D. (2017) “A Biochemical and Biophysical Model of G-quadruplex DNA Recognition by Positive Coactivator of Transcription 4.” J. Biol. Chem. June 9;292(23):9567-9582. PMID: 28416612. PMCID: PMC5465483.
- Lopez, C.R., Singh, S., Hambarde, S., Griffin, W.C., Gao, J., Chib, S., Yu, Y., Ira, G., Raney, K.D., and Kim, N. (2017) “Yeast Sub1 and human PC4 are G-quadruplex binding proteins that suppress genome instability at co-transcriptionally formed G4 DNA.” Nucleic Acids Res. 45:5850-5862. PMID: 28369605. PMCID: PMC5449603.
- Byrd, A.K., Zybailov, B.L., Maddukuri, L., Gao, J., Marecki, J.C., Jaiswal, M., Bell, M.R., Griffin, W.C., Reed, M.R., Chib, S., Mackintosh, S.G., MacNicol, A.M., Baldini, G., Eoff, R.L., and Raney, K.D., (2016) “Evidence that G-quadruplex DNA Accumulates in the Cytoplasm and Participates in Stress Granule Assembly in Response to Oxidative Stress” J. Biol. Chem. Aug. 19; 291:18041-18057. Doi: 10.1074/jbc.M116.718478. Epub 2016 Jul. 1. PMID: 27369081. PMCID: PMC5016190.
- Byrd, A.K. and Raney, K.D., “Structure and function of Pif1 helicase.” 2017. Biochem Soc. Trans. Oct 15;45(5):1159-1171. doi: 10.1042/BST20170096. Epub 2017 Sep 12. Review. PMID: 28900015. PMCID: PMC5870758. DOI: 10.1042/BST20170096
UAMS Researcher Awarded $1.75 Million Grant to Study New Therapies for Metastatic Melanoma
See story on KARK
Alan Tackett, Ph.D., a cancer researcher at the University of Arkansas for Medical Sciences (UAMS), has received a five-year $1.75 million grant from the National Cancer Institute (NCI) to identify new tumor targets in the treatment of metastatic melanoma.
Tackett is a professor in the UAMS College of Medicine Department of Biochemistry and Molecular Biology and serves as associate director of basic research in the UAMS Winthrop P. Rockefeller Cancer Institute.
Although melanoma is less common than other forms of skin cancer, it is the most deadly form of the disease. About 96,480 Americans – including 760 Arkansans – are estimated to be diagnosed with melanoma of the skin in 2019. While not all of these cases will metastasize, or move to other areas of the body, for those that do, treatment options are limited and often unsuccessful.
In recent years, a type of immunotherapy known as immune checkpoint inhibition has shown unprecedented success in the treatment of metastatic melanoma. Immunotherapy harnesses the body’s natural immune system to seek and destroy cancer.
However, while immunotherapies, such as the drugs Keytruda and Opdivo, are successful for many patients, others fail to receive the same positive outcome.
“While these new therapies show great promise for many people, approximately half of metastatic melanoma patients do not respond to immune checkpoint inhibitors. My laboratory is focused on understanding why some patients do not respond to these immunotherapies, so we can use that information to turn these patients into responders” said Tackett, who holds the Scharlau Family Endowed Chair for Cancer Research at UAMS.
To accomplish this task, Tackett uses a sophisticated approach called proteomics that allows his team to measure molecular changes in melanoma cells at the atomic level.
In 2016, Tackett received funding from the National Institutes of Health to implement a National Resource for Proteomics at UAMS, which provides a biomarker discovery platform to researchers at UAMS, as well as those in 23 other states and Puerto Rico.
“By defining pathways active in certain types of melanomas, we can identify new targets for drug development that could increase responsiveness to immune checkpoint inhibitors and thereby save the lives of thousands of patients each year,” said Tackett, whose research has been highly funded by the National Institutes of Health for his entire career.
To accomplish its research, Tackett’s team works closely with UAMS surgeons, oncologists and pathologists to obtain fresh tumor samples removed during surgery at UAMS Medical Center.
“Getting fresh tissue out of surgery and into our lab very quickly is key. This gives us the ability to sort it into individual cell populations and analyze it in ways that are difficult to do with older, fixated tissue samples,” he said.
New patients at the UAMS Winthrop P. Rockefeller Cancer Institute are asked in the early stages of treatment about their interest in donating a portion of their surgically removed tumor, or other specimen such as blood or urine, to benefit research.
The procurement of donated tumor tissue does not require any type of additional procedure, but makes use of a portion of the tissue that was removed during the normal surgical process.
“The research environment at UAMS is ideal for these types of studies as basic scientists work seamlessly with clinicians to move research from the lab to the clinic as quickly as possible,” said Tackett.
This federal grant will bolster the Cancer Institute’s ongoing efforts to receive National Cancer Institute Designation, which requires the institution achieve at least $20 million in annual direct cost research funding from an approved list of funding agencies.
To achieve designation, cancer centers undergo a highly competitive assessment process that demonstrates an outstanding depth and breadth of research in three areas: basic laboratory, patient/clinical and population-based. The designation brings with it many benefits, including expanded access to federal funding for researchers and improved access to clinical trials for patients.
Allie Davis and Alicja Urbaniak win poster awards
Congratulations to Allie Davis and Alicja Urbaniak, Ph.D. for winning the poster competitions at the Drug Discovery and Development Colloquium on June 13-16. Allie is a student in Dr. Paul Miller’s lab, and she won the Outstanding Graduate Student Poster Presentation for her poster entitled “BIOACTIVATION OF HALOGENATED AROMATIC DRUGS AS A PRECURSOR TO DRUG-INDUCED HEPATOTOXICITY”. Dr. Urbaniak is a postdoctoral fellow in Dr. Tim Chamber’s lab, and she won the first place poster presentation in the postdoctoral fellow category for her poster entitled ” ACTIVITY OF COLCHICINE DERIVATIVES TOWARDS PRIMARY ALL AND BREAST CANCER CELLS”.
May publications
Congratulations to first author, Amit Ketkar and other members of Robert Eoff’s lab on their manuscript, Inhibition of Human DNA Polymerases Eta and Kappa by Indole-Derived Molecules Occurs through Distinct Mechanisms. that is featured on the cover of ACS Chemical Biology.
Ketkar A, Maddukuri L, Penthala NR, Reed MR, Zafar MK, Crooks PA, Eoff RL.
ACS Chem Biol. 2019 May