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  1. University of Arkansas for Medical Sciences
  2. College of Medicine
  3. Department of Biomedical Informatics
  4. David W. Ussery

David W. Ussery

Conservation of Two-Component Signal Transduction Systems in E. coli, Salmonella, and Across 100,000 Bacteria of Various Bacterial Phyla

Trudy M. Wassenaar, Visanu Wanchai, Duah Alkam, Intawat Nookaew, David W. Ussery Chapter 7 in Molecular Mechanisms of Microbial Evolution, P. H. Rampelotto (ed.); Springer International Publishing AG, part of Springer Nature 2018Grand Challenges in Biology and Biotechnology, https://doi.org/10.1007/978-3-319-69078-0_7

Filed Under: Publications Tagged With: David W. Ussery, Duah Alkam, Intawat Nookaew, Trudy M. Wassenaar, Visanu Wanchai

Microcephaly by Zika Virus in Thailand Emerging Infectious Diseases

Thidathip Wongsurawat, Niracha Athipanyasilp, Piroon Jenjaroenpun, Se-Ran Jun, Bualan Kaewnapan, Trudy M. Wassenaar, Nuttawut Leelahakorn, Nasikarn Angkasekwinai, Wannee Kantakamalakul, David W. Ussery, Ruengpung Sutthent, Intawat Nookaew, Navin Horthongkham Abstract We report a confirmed case of congenital Zika virus infection with microcephaly (CZVIM) caused by autochthonous infection at week 9 of pregnancy with Zika virus (ZIKV) […]

Filed Under: Publications Tagged With: Bualan Kaewnapan, David W. Ussery, Intawat Nookaew, Microcephaly, Nasikarn Angkasekwinai, Navin Horthongkham, Niracha Athipanyasilp, Nuttawut Leelahakorn, Piroon Jenjaroenpun, Ruengpung Sutthent, Se-Ran Jun, Thailand, Thidathip Wongsurawat, Trudy M. Wassenaar, Wannee Kantakamalakul, Zika

Genome-Based Comparison of Clostridioides difficile : Average Amino Acid Identity Analysis of Core Genomes

Adriana Cabal, Se-Ran Jun, Piroon Jenjaroenpun, Visanu Wanchai, Intawat Nookaew, Thidathip Wongsurawat, Mary J. Burgess, Atul Kothari, Trudy M. Wassenaar1, David W. Ussery Received: 30 August 2017 /Accepted: 2 February 2018 # The Author(s) 2018. This article is an open access publication Abstract Infections due to Clostridioides difficile (previously known as Clostridium difficile) are a […]

Filed Under: Department News, Publications Tagged With: AAI .MLST, Adriana Cabal, Atul Kothari, C. difficile, Community-acquired infections, Comparative genomics, David W. Ussery, Intawat Nookaew, Mary J. Burgess, Piroon Jenjaroenpun, Se-Ran Jun, Thidathip Wongsurawat, Trudy M. Wassenaar1, Visanu Wanchai

Gender Differences in the Pathogenesis and Management of Heart Disease

Chapter 7 in the book “Gender Differences in the Pathogenesis and Management of Heart Disease”, Springer/Nature publishing company, in the press (January 2018).   ISBN:978-3-319-71134-8 Adriana Cabal, Trudy M. Wassenaar, and David W. Ussery Abstract The literature was reviewed to search for consistently reported differences in the gut microbiome between females and males, in an […]

Filed Under: Department News, Publications Tagged With: David W. Ussery, gut microbiome, heart disease, Trudy M. Wassenaar

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D

Introduction: The genome of the most well studied eukaryotic model organism, Saccharomyces cerevisiae strain S288c, was sequenced and released in 1996; it was the first complete, high quality genome sequence of an eukaryal organism (1). Since then, the development ofDNAsequencing technologies has yielded scientific breakthroughs that enable us to obtain and analyze genomic DNA sequences […]

Filed Under: Department News, Publications Tagged With: David W. Ussery, genomes, genomic, Intawat Nookaew, Jens Nielsen, Piroon Jenjaroenpun, Preecha Patumcharoenpal, Rui Pereira, sequencing, Thidathip Wongsurawat

Insights from Comparative Genomics of the Genus Salmonella

Submitted: May 5th 2016 | Reviewed: December 1st 2016 | Published: April 5th 2017 | DOI: 10.5772/67131 Trudy M. Wassenaar, Se-Ran Jun, Visanu Wanchai, Preecha Patumcharoenpol, Intawat Nookaew, Katrina Schlum, Michael R. Leuze and David W. Ussery Abstract Comparative genomics have become a standard approach to gain insights into the inter – relationships of microorganisms. […]

Filed Under: Publications Tagged With: AAI tree, Comparative genomics, core genome, David W. Ussery, Intawat Nookaew, Katrina Schlum, Michael R. Leuze, Preecha Patumcharoenpal, Salmonella, Se-Ran Jun, small RNA, Trudy M. Wassenaar

PanViz: Interactive Visualization of the Structure of Functionally Annotated Pangenomes

Bioinformatics. 2017 Jan 5. pii: btw761. doi: 10.1093/bioinformatics/btw761. [Epub ahead of print] PubMed PMID: 28057677 Pedersen TL, Nookaew I, Wayne Ussery D, Månsson M. Summary PanViz is a novel, interactive, visualization tool for pangenome analysis. PanViz allows visualization of changes in gene group (groups of similar genes across genomes) classification as different subsets of pangenomes […]

Filed Under: Publications Tagged With: David W. Ussery, Intawat Nookaew, interactive visualization Annotated Pangenomes, Mansson M, Pedersen TL

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