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  1. University of Arkansas for Medical Sciences
  2. College of Medicine
  3. Department of Biomedical Informatics
  4. Intawat Nookaew

Intawat Nookaew

Conservation of Two-Component Signal Transduction Systems in E. coli, Salmonella, and Across 100,000 Bacteria of Various Bacterial Phyla

Trudy M. Wassenaar, Visanu Wanchai, Duah Alkam, Intawat Nookaew, David W. Ussery Chapter 7 in Molecular Mechanisms of Microbial Evolution, P. H. Rampelotto (ed.); Springer International Publishing AG, part of Springer Nature 2018Grand Challenges in Biology and Biotechnology, https://doi.org/10.1007/978-3-319-69078-0_7

Filed Under: Publications Tagged With: David W. Ussery, Duah Alkam, Intawat Nookaew, Trudy M. Wassenaar, Visanu Wanchai

Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis type 2-diabetes mellitus rat model

AJP-Endocrinology and Metabolism, in the press, July 2018 Brian Piccolo, James Graham, Kimber Stanhope, Intawat Nookaew, Kelly Mecer, Sree Chintapalli, Umesh Wankhade, Kartik Shankar, Peter Havel, Sean Adams Abstract Many factors contribute to, or can modify, the development of diseases such as obesity and type 2 diabetes, including the naturally occurring bacteria residing in the […]

Filed Under: Publications Tagged With: Brian Piccolo, Intawat Nookaew, James Graham, Kartik Shankar, Kelly Mecer, Kimber Stanhope, Peter Havel, Sean Adams, Sree Chintapalli, Umesh Wankhade

PARP1 is up-regulated in Non-small cell lung cancer tissues in the presence of the cyanobacterial toxin microcystin

Front. Microbiol. | doi: 10.3389/fmicb.2018.01757 Patrick Apopa, Lisa Alley, Rosalind Penney, Konstantinos Arnaoutakis, Mathew Steliga, Susan Jeffus, Emine Bircan, Banu Gopalan, Jing Jin, Preecha Patumcharoenpol, Piroon Jenjaroenpun, Thidathip Wongsurawat, Nishi Shah, Gunnar Boysen, David Ussery, Intawat Nookaew, Pebbles Fagan, Gurkan Bebek, Mohammed Orloff Abstract Non-small cell lung cancer (NSCLC) is the major form of lung […]

Filed Under: Publications Tagged With: Banu Gopalan, David Ussery, Emine Bircan, Gunnar Boysen, Gurkan Bebek, Intawat Nookaew, Jing Jin, Konstantinos Arnaoutakis, Lisa Alley, Mathew Steliga, Mohammed Orloff, Nishi Shah, Patrick Apopa, Pebbles Fagan, Piroon Jenjaroenpun, Preecha Patumcharoenpol, Rosalind Penney, Susan Jeffus, Thidathip Wongsurawat

Microcephaly by Zika Virus in Thailand Emerging Infectious Diseases

Thidathip Wongsurawat, Niracha Athipanyasilp, Piroon Jenjaroenpun, Se-Ran Jun, Bualan Kaewnapan, Trudy M. Wassenaar, Nuttawut Leelahakorn, Nasikarn Angkasekwinai, Wannee Kantakamalakul, David W. Ussery, Ruengpung Sutthent, Intawat Nookaew, Navin Horthongkham Abstract We report a confirmed case of congenital Zika virus infection with microcephaly (CZVIM) caused by autochthonous infection at week 9 of pregnancy with Zika virus (ZIKV) […]

Filed Under: Publications Tagged With: Bualan Kaewnapan, David W. Ussery, Intawat Nookaew, Microcephaly, Nasikarn Angkasekwinai, Navin Horthongkham, Niracha Athipanyasilp, Nuttawut Leelahakorn, Piroon Jenjaroenpun, Ruengpung Sutthent, Se-Ran Jun, Thailand, Thidathip Wongsurawat, Trudy M. Wassenaar, Wannee Kantakamalakul, Zika

Genome-Based Comparison of Clostridioides difficile : Average Amino Acid Identity Analysis of Core Genomes

Adriana Cabal, Se-Ran Jun, Piroon Jenjaroenpun, Visanu Wanchai, Intawat Nookaew, Thidathip Wongsurawat, Mary J. Burgess, Atul Kothari, Trudy M. Wassenaar1, David W. Ussery Received: 30 August 2017 /Accepted: 2 February 2018 # The Author(s) 2018. This article is an open access publication Abstract Infections due to Clostridioides difficile (previously known as Clostridium difficile) are a […]

Filed Under: Department News, Publications Tagged With: AAI .MLST, Adriana Cabal, Atul Kothari, C. difficile, Community-acquired infections, Comparative genomics, David W. Ussery, Intawat Nookaew, Mary J. Burgess, Piroon Jenjaroenpun, Se-Ran Jun, Thidathip Wongsurawat, Trudy M. Wassenaar1, Visanu Wanchai

Genome Characterization of Oleaginous Aspergillus oryzae BCC7051: A Potential Fungal-Based Platform for Lipid Production

Curr Microbiol. 2018 Jan;75(1):57-70. doi: 10.1007/s00284-017-1350-7. Epub 2017 Sep 1. Thammarongtham C, Nookaew I, Vorapreeda T, Srisuk T, Land ML, Jeennor S, Laoteng K Abstract The selected robust fungus, Aspergillus oryzae strain BCC7051 is of interest for biotechnological production of lipid-derived products due to its capability to accumulate high amount of intracellular lipids using various […]

Filed Under: Department News, Publications Tagged With: Aspergillus oryzae, Genome, Intawat Nookaew, Lipid Production

Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome

mSystems, 3:e00070-17.  https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5781258/ DOI: 10.1128/mSystems.00070-17 Abiotic Stresses Shift Belowground Populus-Associated Bacteria Toward a Core Stress Microbiome Collin M. Timm, Kelsey R. Carter, Alyssa A. Carrell, Se-Ran Jun, Sara S. Jawdy, Jessica M. Vélez, Lee E. Gunter, Zamin Yang, Intawat Nookaew, Nancy L. Engle, Tse-Yuan S. Lu, Christopher W. Schadt, Timothy J. Tschaplinski, Mitchel J. Doktycz, […]

Filed Under: Department News, Publications Tagged With: abiotic stresses, Intawat Nookaew, microbiome

Distinctive molecular signature and activated signaling pathways in aortic smooth muscle cells of patients with myocardial infarction

http://www.atherosclerosis-journal.com/article/S0021-9150(18)30024-8/fulltext DOI: http://dx.doi.org/10.1016/j.atherosclerosis.2018.01.024 Atherosclerosis, manuscript in the press, accepted 16 January, 2028 Thidathip Wongsurawat, Chin Cheng Woo, Antonis Giannakakis, Xiao Yun Lin, Esther Sok Hwee Cheow, Chuen Neng Lee, Mark Richards, Siu Kwan Sze, Intawat Nookaew, Vladimir A. Kuznetsov’Correspondence information about the author Vladimir A. Kuznetsov, Vitaly Sorokin Abstract Background and aims: We aim to […]

Filed Under: Department News, Publications Tagged With: Intawat Nookaew, Thidathip Wongsurawat

Complete genomic and transcriptional landscape analysis using third-generation sequencing: a case study of Saccharomyces cerevisiae CEN.PK113-7D

Introduction: The genome of the most well studied eukaryotic model organism, Saccharomyces cerevisiae strain S288c, was sequenced and released in 1996; it was the first complete, high quality genome sequence of an eukaryal organism (1). Since then, the development ofDNAsequencing technologies has yielded scientific breakthroughs that enable us to obtain and analyze genomic DNA sequences […]

Filed Under: Department News, Publications Tagged With: David W. Ussery, genomes, genomic, Intawat Nookaew, Jens Nielsen, Piroon Jenjaroenpun, Preecha Patumcharoenpal, Rui Pereira, sequencing, Thidathip Wongsurawat

Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics

https://doi.org/10.1016/j.ygeno.2017.03.001 Subazini Thankaswamy-Kosalai, Partho Sen, Intawat Nookaew Abstract Massive data produced due to the advent of next-generation sequencing (NGS) technology is widely used for biological researches and medical diagnosis. The crucial step in NGS analysis is read alignment or mapping which is computationally intensive and complex. The mapping bias tends to affect the downstream analysis, […]

Filed Under: Publications Tagged With: Algorithm, Aligners, Alignments, Genome, Intawat Nookaew, Mapping, Next-generation sequencing, NGS, Partho Sen, Reads, Subazini Thankaswamy-Kosalai

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